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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_0458KEGG: pfa:PF10_0351 hypothetical protein. (470 aa)    
Predicted Functional Partners:
Swol_0386
Molecular chaperone-like protein; KEGG: bbr:BB3934 molecular chaperone; Belongs to the heat shock protein 70 family.
 
 0.950
Swol_1996
cAMP-binding protein; KEGG: ppu:PP3250 transporter, putative.
 
 
 0.934
Swol_0059
KEGG: sth:STH1375 hypothetical protein.
 
 
 0.904
Swol_0635
Hypothetical protein; KEGG: cpv:cgd5_2590 Alg5 like dolichyl-phosphate beta-glucosyltransferase.
 
 
 0.900
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.858
Swol_0460
KEGG: dsy:DSY3269 hypothetical protein.
 
     0.845
Swol_0580
KEGG: lic:LIC13021 hypothetical protein.
 
 
 
 0.838
rpoA
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.835
Swol_0189
KEGG: tte:TTE0491 flagellar protein.
   
 0.834
Swol_1503
YvyF; KEGG: bld:BLi03788 YvyF.
   
 0.834
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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