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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_0459KEGG: dsy:DSY1902 hypothetical protein. (268 aa)    
Predicted Functional Partners:
Swol_0460
KEGG: dsy:DSY3269 hypothetical protein.
 
     0.838
Swol_0872
KEGG: dsy:DSY2971 hypothetical protein.
  
     0.567
Swol_1434
KEGG: mta:Moth_1703 hypothetical protein.
  
     0.542
Swol_1087
KEGG: mta:Moth_1761 hypothetical protein.
  
     0.541
Swol_0441
KEGG: chy:CHY_1645 hypothetical protein.
  
     0.539
Swol_0676
KEGG: dsy:DSY2235 hypothetical protein; Belongs to the FPP/GGPP synthase family.
  
     0.539
Swol_1786
KEGG: mta:Moth_2110 hypothetical protein.
  
     0.536
Swol_0096
KEGG: cac:CAC2925 HD superfamily hydrolase.
  
     0.535
Swol_0458
KEGG: pfa:PF10_0351 hypothetical protein.
 
     0.525
Swol_1644
Hypothetical protein.
  
     0.524
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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