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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_0469KEGG: chy:CHY_0540 hypothetical protein; Belongs to the UPF0297 family. (90 aa)    
Predicted Functional Partners:
Swol_0470
Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.
  
    0.911
Swol_0471
KEGG: chy:CHY_0543 hypothetical protein; Belongs to the UPF0473 family.
  
  
 0.792
Swol_1499
Conserved hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
 
     0.765
Swol_0645
KEGG: chy:CHY_0459 hypothetical protein.
  
     0.754
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
    0.711
Swol_2541
KEGG: cac:CAC3725 uncharacterized protein, homolog of Streptococcus pneumoniae (gi:2109447).
  
     0.697
Swol_0081
KEGG: ctc:CTC00197 stage V sporulation protein B.
  
     0.681
Swol_0758
KEGG: dsy:DSY2678 hypothetical protein.
  
  
 0.630
Swol_1275
KEGG: tte:TTE1517 predicted RNA-binding protein homologous to eukaryotic snRNP.
  
     0.625
whiA
Conserved hypothetical protein; Involved in cell division and chromosome segregation.
  
     0.578
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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