STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_0514KEGG: tte:TTE1075 hypothetical protein. (548 aa)    
Predicted Functional Partners:
Swol_0512
KEGG: gka:GK0343 type I restriction modification system M subunit (site-specific DNA-methyltransferase subunit).
       0.581
Swol_0513
Hypothetical protein; KEGG: xfa:XF0296 type I restriction-modification system specificity determinant.
       0.581
Swol_0515
KEGG: eba:p2A50 type I restriction-modification system (specificity subunit).
       0.488
Swol_1705
Hypothetical protein; KEGG: tte:TTE2242 transposase.
  
    0.474
Swol_1745
Transposase-like protein; KEGG: tte:TTE2604 transposase.
  
     0.468
Swol_2238
Transposase-like protein; KEGG: tte:TTE2604 transposase.
  
     0.468
Swol_0152
Hypothetical protein; KEGG: tte:TTE2242 transposase.
  
    0.465
Swol_0159
KEGG: mba:Mbar_A2947 hypothetical protein.
  
     0.439
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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