STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_0515KEGG: eba:p2A50 type I restriction-modification system (specificity subunit). (263 aa)    
Predicted Functional Partners:
Swol_0512
KEGG: gka:GK0343 type I restriction modification system M subunit (site-specific DNA-methyltransferase subunit).
 
 0.991
Swol_0516
KEGG: gka:GK0346 type I restriction-modification system R subunit (endonuclease).
 
 
 0.968
Swol_2258
KEGG: chy:CHY_0830 type I restriction-modification system, M subunit.
 
 0.939
Swol_0513
Hypothetical protein; KEGG: xfa:XF0296 type I restriction-modification system specificity determinant.
     0.932
Swol_2256
Type I restriction-modification system, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
  
 0.811
Swol_0991
KEGG: gsu:GSU2107 hypothetical protein.
  
 
 0.803
Swol_0994
Hypothetical protein; KEGG: chy:CHY_2653 putative restriction enzyme.
  
 
 0.803
Swol_0997
KEGG: mac:MA2372 hypothetical protein.
  
 
 0.803
Swol_2491
KEGG: dsy:DSY0677 hypothetical protein.
  
 
 0.803
Swol_2506
KEGG: pol:Bpro_5027 type II restriction enzyme.
  
 
 0.803
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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