STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_0531KEGG: mta:Moth_1554 type II secretion system protein E. (417 aa)    
Predicted Functional Partners:
Swol_0533
KEGG: mta:Moth_1552 type II secretion system protein.
 
 
 0.998
Swol_0539
Tfp pilus assembly protein ATPase PilM-like protein; KEGG: dra:DR0770 fimbrial assembly protein PilM, putative.
 
 
 0.944
Swol_0538
Type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A; KEGG: tte:TTE1266 leader peptidase (prepilin peptidase) / N-methyltransferase.
 
 
 0.928
Swol_0534
Hypothetical protein; KEGG: tte:TTE1265 type IV pilus assembly protein PilA.
 
 
 0.927
Swol_0532
KEGG: mta:Moth_1553 twitching motility protein.
 
  
0.904
Swol_0541
Hypothetical protein; KEGG: tte:TTE1274 Fimbrial assembly protein.
  
 
 0.814
Swol_0702
KEGG: xac:XAC0531 hypothetical protein.
  
 
 0.781
Swol_1596
KEGG: mta:Moth_0570 competence protein ComEA helix-hairpin-helix region.
  
  
 0.743
Swol_1595
KEGG: mta:Moth_0575 DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.717
Swol_0601
KEGG: cyb:CYB_0507 sensory box histidine kinase/response regulator.
  
 
 0.697
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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