STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_0533KEGG: mta:Moth_1552 type II secretion system protein. (402 aa)    
Predicted Functional Partners:
Swol_0531
KEGG: mta:Moth_1554 type II secretion system protein E.
 
 
 0.998
Swol_0539
Tfp pilus assembly protein ATPase PilM-like protein; KEGG: dra:DR0770 fimbrial assembly protein PilM, putative.
 
 
 
 0.960
Swol_0532
KEGG: mta:Moth_1553 twitching motility protein.
 
  
 0.948
Swol_0534
Hypothetical protein; KEGG: tte:TTE1265 type IV pilus assembly protein PilA.
 
  
 0.945
Swol_0538
Type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A; KEGG: tte:TTE1266 leader peptidase (prepilin peptidase) / N-methyltransferase.
 
  
 0.939
Swol_0541
Hypothetical protein; KEGG: tte:TTE1274 Fimbrial assembly protein.
   
 
 0.816
Swol_1595
KEGG: mta:Moth_0575 DNA internalization-related competence protein ComEC/Rec2.
 
  
 0.796
Swol_0702
KEGG: xac:XAC0531 hypothetical protein.
  
  
 0.759
Swol_1596
KEGG: mta:Moth_0570 competence protein ComEA helix-hairpin-helix region.
  
  
 0.757
Swol_2539
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
  
    0.583
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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