STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_0535Hypothetical protein. (143 aa)    
Predicted Functional Partners:
Swol_0536
Hypothetical protein.
       0.773
Swol_0537
Hypothetical protein.
       0.618
Swol_0534
Hypothetical protein; KEGG: tte:TTE1265 type IV pilus assembly protein PilA.
       0.535
Swol_0538
Type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A; KEGG: tte:TTE1266 leader peptidase (prepilin peptidase) / N-methyltransferase.
       0.487
Swol_0539
Tfp pilus assembly protein ATPase PilM-like protein; KEGG: dra:DR0770 fimbrial assembly protein PilM, putative.
       0.487
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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