STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_0543KEGG: mta:Moth_1541 peptidase U62, modulator of DNA gyrase. (446 aa)    
Predicted Functional Partners:
Swol_0542
Microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62; KEGG: mta:Moth_1542 peptidase U62, modulator of DNA gyrase.
 
    
0.865
aroQ
3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
       0.802
Swol_0545
KEGG: chy:CHY_1873 aminopeptidase P.
  
    0.792
efp
Translation elongation factor P (EF-P); Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
       0.556
Swol_0541
Hypothetical protein; KEGG: tte:TTE1274 Fimbrial assembly protein.
       0.514
Swol_0540
Hypothetical protein.
       0.492
Swol_0539
Tfp pilus assembly protein ATPase PilM-like protein; KEGG: dra:DR0770 fimbrial assembly protein PilM, putative.
       0.431
Swol_0915
Response regulator receiver protein; KEGG: mta:Moth_1106 hypothetical protein.
  
     0.422
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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