STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_0594KEGG: tte:TTE1308 hypothetical protein. (265 aa)    
Predicted Functional Partners:
Swol_0593
KEGG: chy:CHY_1975 glycosyltransferase, group 2 family.
 
  
 0.921
Swol_0596
KEGG: tte:TTE1309 hypothetical protein.
 
     0.914
Swol_0124
KEGG: mta:Moth_0218 glycosyl transferase, family 4.
     
  0.900
Swol_0592
KEGG: tte:TTE1306 hypothetical protein.
 
     0.871
Swol_0591
KEGG: tte:TTE1305 hypothetical protein.
 
     0.854
Swol_0595
Tripeptidase; KEGG: bld:BLi02571 similar to tripeptidase; RBL01653.
       0.814
Swol_0673
KEGG: tte:TTE0948 hypothetical protein.
  
     0.772
Swol_1350
KEGG: tte:TTE2785 UDP-N-acetylmuramyl tripeptide synthase; Belongs to the MurCDEF family.
  
  
 0.655
murD
UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.
 
  
 0.645
murF
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
  
 
 0.630
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.