xerD protein (Syntrophomonas wolfei Goettingen)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

xerD

Tyrosine recombinase XerD subunit; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (296 aa)

Predicted Functional Partners:

Swol_0606

0.588

Swol_0605

0.532

Swol_0739

0.523

recR

0.522

deoB

0.499

hslV

0.444

Swol_0188

0.424

Your Current Organism:

Syntrophomonas wolfei Goettingen

NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Swol_0188	Swol_0739	Swol_0188	Swol_0739	KEGG: mta:Moth_0225 phosphoribosyltransferase.	Site-specific recombinase XerD-like protein; KEGG: pol:Bpro_0712 phage integrase.	0.424
Swol_0188	xerD	Swol_0188	Swol_0607	KEGG: mta:Moth_0225 phosphoribosyltransferase.	Tyrosine recombinase XerD subunit; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.	0.424
Swol_0605	Swol_0606	Swol_0605	Swol_0606	Uncharacterized membrane protein; KEGG: mta:Moth_1503 required for dissolution of the septal cell wall; RBL05740.	Hypothetical protein.	0.656
Swol_0605	deoB	Swol_0605	Swol_0608	Uncharacterized membrane protein; KEGG: mta:Moth_1503 required for dissolution of the septal cell wall; RBL05740.	Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.	0.446
Swol_0605	xerD	Swol_0605	Swol_0607	Uncharacterized membrane protein; KEGG: mta:Moth_1503 required for dissolution of the septal cell wall; RBL05740.	Tyrosine recombinase XerD subunit; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.	0.532
Swol_0606	Swol_0605	Swol_0606	Swol_0605	Hypothetical protein.	Uncharacterized membrane protein; KEGG: mta:Moth_1503 required for dissolution of the septal cell wall; RBL05740.	0.656
Swol_0606	xerD	Swol_0606	Swol_0607	Hypothetical protein.	Tyrosine recombinase XerD subunit; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.	0.588
Swol_0739	Swol_0188	Swol_0739	Swol_0188	Site-specific recombinase XerD-like protein; KEGG: pol:Bpro_0712 phage integrase.	KEGG: mta:Moth_0225 phosphoribosyltransferase.	0.424
Swol_0739	hslV	Swol_0739	Swol_0843	Site-specific recombinase XerD-like protein; KEGG: pol:Bpro_0712 phage integrase.	CodW component of CodWX peptidase. Threonine peptidase. MEROPS family T01B; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.	0.444
Swol_0739	xerD	Swol_0739	Swol_0607	Site-specific recombinase XerD-like protein; KEGG: pol:Bpro_0712 phage integrase.	Tyrosine recombinase XerD subunit; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.	0.523
deoB	Swol_0605	Swol_0608	Swol_0605	Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.	Uncharacterized membrane protein; KEGG: mta:Moth_1503 required for dissolution of the septal cell wall; RBL05740.	0.446
deoB	xerD	Swol_0608	Swol_0607	Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.	Tyrosine recombinase XerD subunit; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.	0.499
hslV	Swol_0739	Swol_0843	Swol_0739	CodW component of CodWX peptidase. Threonine peptidase. MEROPS family T01B; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.	Site-specific recombinase XerD-like protein; KEGG: pol:Bpro_0712 phage integrase.	0.444
hslV	xerD	Swol_0843	Swol_0607	CodW component of CodWX peptidase. Threonine peptidase. MEROPS family T01B; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.	Tyrosine recombinase XerD subunit; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.	0.444
recR	xerD	Swol_0032	Swol_0607	DNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.	Tyrosine recombinase XerD subunit; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.	0.522
xerD	Swol_0188	Swol_0607	Swol_0188	Tyrosine recombinase XerD subunit; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.	KEGG: mta:Moth_0225 phosphoribosyltransferase.	0.424
xerD	Swol_0605	Swol_0607	Swol_0605	Tyrosine recombinase XerD subunit; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.	Uncharacterized membrane protein; KEGG: mta:Moth_1503 required for dissolution of the septal cell wall; RBL05740.	0.532
xerD	Swol_0606	Swol_0607	Swol_0606	Tyrosine recombinase XerD subunit; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.	Hypothetical protein.	0.588
xerD	Swol_0739	Swol_0607	Swol_0739	Tyrosine recombinase XerD subunit; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.	Site-specific recombinase XerD-like protein; KEGG: pol:Bpro_0712 phage integrase.	0.523
xerD	deoB	Swol_0607	Swol_0608	Tyrosine recombinase XerD subunit; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.	Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.	0.499

page 1 of 2

Server load: low (32%) [HD]

Permalink

Network

Neighborhood

Textmining

Cooccurrence

Experiments

Coexpression

Databases

Fusion

© STRING Consortium 2025

Credits

Access

Info

About