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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_0612Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: dsy:DSY2305 hypothetical protein; Belongs to the peptidase S11 family. (381 aa)    
Predicted Functional Partners:
Swol_0909
KEGG: mta:Moth_1058 serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.
 
  
 
0.923
Swol_1109
Peptidoglycan glycosyltransferase; KEGG: mta:Moth_1710 penicillin-binding protein 1A.
  
 
 0.918
spoIIAB
Putative anti-sigma regulatory factor, serine/threonine protein kinase; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
 
   
 0.770
Swol_0820
Peptidoglycan glycosyltransferase; KEGG: mta:Moth_0837 stage V sporulation protein D.
 
 
 0.753
Swol_0613
Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)-like protein; KEGG: dsy:DSY2302 hypothetical protein; Belongs to the anti-sigma-factor antagonist family.
 
   
 0.730
Swol_1638
KEGG: mta:Moth_0540 peptidoglycan glycosyltransferase.
 
 
 0.711
Swol_0615
KEGG: mta:Moth_1496 sigma 28 (flagella/sporulation); Belongs to the sigma-70 factor family.
 
     0.647
Swol_1413
KEGG: mta:Moth_1356 nucleoside recognition.
  
  
 0.564
Swol_0063
KEGG: tte:TTE2552 pro-sigma-E processing factor spoIIR.
  
  
 0.563
Swol_0627
KEGG: mta:Moth_1375 stage V sporulation AD.
 
   
 0.560
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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