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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_0613Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)-like protein; KEGG: dsy:DSY2302 hypothetical protein; Belongs to the anti-sigma-factor antagonist family. (110 aa)    
Predicted Functional Partners:
spoIIAB
Putative anti-sigma regulatory factor, serine/threonine protein kinase; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
 
 
 0.994
Swol_0615
KEGG: mta:Moth_1496 sigma 28 (flagella/sporulation); Belongs to the sigma-70 factor family.
 
  
 0.973
Swol_2375
KEGG: sth:STH103 stage III sporulation protein D.
  
   
 0.788
Swol_0836
RNA polymerase sigma-G factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
   
 0.770
Swol_1794
Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: mag:amb3520 serine phosphatase RsbU, regulator of sigma subunit.
  
 
 0.766
Swol_1812
Hypothetical protein; KEGG: pfo:Pfl_2556 GCN5-related N-acetyltransferase.
  
 
 0.766
Swol_1997
Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: pfo:Pfl_2556 GCN5-related N-acetyltransferase.
  
 
 0.766
Swol_1810
Hypothetical protein.
  
 
 0.761
Swol_0093
KEGG: tte:TTE2396 serine phosphatase RsbU, regulator of sigma subunit.
  
  
 0.754
Swol_1322
Conserved hypothetical protein; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
   
 0.752
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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