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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_0629KEGG: mta:Moth_1373 GerA spore germination protein. (500 aa)    
Predicted Functional Partners:
Swol_0628
KEGG: mta:Moth_1374 SpoVA protein.
 
   
 0.959
Swol_0627
KEGG: mta:Moth_1375 stage V sporulation AD.
 
  
 0.956
Swol_0626
KEGG: tte:TTE1319 spore formation protein spoVAC.
 
  
 0.918
Swol_0085
KEGG: tte:TTE2450 hypothetical protein.
  
   
 0.777
gpr
GPR endopeptidase; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
    0.772
Swol_1322
Conserved hypothetical protein; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
     0.762
Swol_0589
SpoIVB peptidase. Serine peptidase. MEROPS family S55; KEGG: dsy:DSY2342 hypothetical protein.
  
     0.761
Swol_0835
Sporulation sigma factor SigE; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
     0.760
Swol_0080
KEGG: mta:Moth_0083 transcriptional regulator, AbrB family.
  
     0.742
Swol_0836
RNA polymerase sigma-G factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
     0.742
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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