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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_0645KEGG: chy:CHY_0459 hypothetical protein. (229 aa)    
Predicted Functional Partners:
Swol_0646
KEGG: mta:Moth_0626 protein of unknown function DUF34; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
 
  
 0.984
Swol_0469
KEGG: chy:CHY_0540 hypothetical protein; Belongs to the UPF0297 family.
  
     0.754
Swol_1499
Conserved hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
  
     0.731
addA
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination. The AddA nuclease domain is required for chi fragment generation; this subunit has the helicase and 3' -> 5' nuclease activities; Belongs to the helicase family. AddA subfamily.
 
     0.695
Swol_0081
KEGG: ctc:CTC00197 stage V sporulation protein B.
  
     0.680
addB
DNA helicase/exodeoxyribonuclease V, subunit B; ATP-dependent DNA helicase; Belongs to the helicase family. AddB/RexB type 1 subfamily.
 
     0.641
Swol_1275
KEGG: tte:TTE1517 predicted RNA-binding protein homologous to eukaryotic snRNP.
 
     0.620
Swol_2541
KEGG: cac:CAC3725 uncharacterized protein, homolog of Streptococcus pneumoniae (gi:2109447).
  
     0.525
Swol_2473
KEGG: chy:CHY_2627 radical SAM domain protein.
  
     0.501
whiA
Conserved hypothetical protein; Involved in cell division and chromosome segregation.
  
     0.481
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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