STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_0664KEGG: ctc:CTC00756 ABC transporter ATP-binding protein. (248 aa)    
Predicted Functional Partners:
Swol_0665
KEGG: ctc:CTC00757 hypothetical protein.
 
 
 0.999
Swol_1912
KEGG: tte:TTE2789 selenocysteine lyase.
  
  
 0.767
Swol_2429
Cysteine desulfurase; KEGG: dsy:DSY0801 hypothetical protein.
  
  
 0.767
Swol_0663
ATPases involved in chromosome partitioning-like protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
 
   
 0.699
Swol_0666
KEGG: chy:CHY_1527 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
     
 0.632
Swol_1300
KEGG: ctc:CTC02552 thioredoxin reductase.
 
  
 0.530
Swol_0662
KEGG: tte:TTE0242 protein, probably involved in Fe2+ transport.
 
   
 0.492
Swol_0441
KEGG: chy:CHY_1645 hypothetical protein.
  
     0.463
Swol_2047
KEGG: mta:Moth_1895 alkylhydroperoxidase AhpD core.
 
     0.458
Swol_2471
KEGG: chy:CHY_0906 thioredoxin-disulfide reductase.
 
  
 0.455
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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