Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swol_0691KEGG: chy:CHY_1211 radical SAM domain protein. (333 aa)    
Predicted Functional Partners:
Swol_0692
KEGG: mta:Moth_2198 putative transcriptional regulator, AsnC family.
  
 0.981
Swol_0693
Transcriptional regulator, AsnC family; KEGG: dsy:DSY2220 hypothetical protein.
 
  
 0.957
Swol_0688
KEGG: mma:MM0309 metallo cofactor biosynthesis protein.
 
  
 
0.919
hemL
KEGG: chy:CHY_1212 glutamate-1-semialdehyde-2,1-aminomutase.
  
  
 0.628
Swol_0687
uroporphyrinogen-III synthase / uroporphyrinogen-III C-methyltransferase; KEGG: dsy:DSY2224 hypothetical protein.
 
  
 0.588
Swol_0690
KEGG: mta:Moth_1246 porphobilinogen synthase; Belongs to the ALAD family.
  
  
 0.565
Swol_1084
Non-ribosomal peptide synthetase modules and related proteins-like protein; KEGG: bld:BLi00402 lichenysin synthetase B; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.496
Swol_0695
MCP methyltransferase, CheR-type; KEGG: dsy:DSY3036 hypothetical protein.
       0.436
Swol_2054
KEGG: cpe:CPE1014 probable flavoprotein.
  
  
 0.410
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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