STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_0711KEGG: bbr:BB0122 DegT/DnrJ/EryC1/StrS aminotransferase family protein; Belongs to the DegT/DnrJ/EryC1 family. (388 aa)    
Predicted Functional Partners:
Swol_0716
Pyridoxal phosphate-dependent enzyme; Apparently involved in regulation of cell wall biogenesis-like protein; KEGG: lic:LIC12168 aspartate aminotransferase.
  
  
  0.938
fcl
GDP-fucose synthetase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
  
 
 0.920
Swol_0710
KEGG: cbu:CBU_0829 NAD dependent epimerase/dehydratase family protein.
  
 0.895
Swol_0712
KEGG: bbr:BB0123 putative asparagine synthetase.
  
    0.789
Swol_0706
KEGG: bbr:BB0155 probable oxidoreductase.
 
  
 0.723
Swol_1908
Glycosyltransferases involved in cell wall biogenesis-like protein; KEGG: pca:Pcar_1758 putative glycosyl transferase.
  
  
 0.688
Swol_0707
KEGG: aae:aq_1335 nucleotide sugar epimerase.
  
 
 0.679
Swol_0704
KEGG: pgi:PG0002 hexapeptide transferase family protein.
  
 0.664
Swol_0227
KEGG: mbu:Mbur_1591 polysaccharide biosynthesis protein CapD.
 
  
 0.589
Swol_2137
KEGG: gvi:gll3084 mannose-1-phosphate guanyltransferase.
  
  
 0.562
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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