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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_0727Carbohydrate oxidoreductase, putative; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. (302 aa)    
Predicted Functional Partners:
Swol_0726
KEGG: gsu:GSU2246 polysaccharide biosynthesis domain protein.
 
  
 0.928
Swol_0728
KEGG: gsu:GSU2245 UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
 
  
 0.912
Swol_0634
KEGG: mth:MTH373 dTDP-glucose 4,6-dehydratase related protein.
 
 0.895
Swol_0730
KEGG: spn:SP0351 capsular polysaccharide biosynthesis protein Cps4F.
 
  
 0.860
Swol_0729
Nucleoside-diphosphate-sugar epimerases-like protein; KEGG: fra:Francci3_1303 methyltransferase FkbM.
 
 
 0.824
Swol_0725
KEGG: dar:Daro_1261 glycosyl transferase, group 1.
  
  
 0.680
Swol_1908
Glycosyltransferases involved in cell wall biogenesis-like protein; KEGG: pca:Pcar_1758 putative glycosyl transferase.
 
  
 0.627
Swol_2137
KEGG: gvi:gll3084 mannose-1-phosphate guanyltransferase.
  
  
 0.592
Swol_0731
KEGG: pst:PSPTO1755 glycosyl transferase, group 4 family protein.
     
 0.568
fcl
GDP-fucose synthetase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
 
 
 0.473
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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