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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_0734KEGG: sat:SYN_00397 ATP binding protein. (248 aa)    
Predicted Functional Partners:
Swol_0735
KEGG: dsy:DSY3297 hypothetical protein.
  
 0.960
Swol_1201
KEGG: tte:TTE2774 replicative DNA helicase.
  
 
 0.769
Swol_2108
KEGG: mta:Moth_0087 sporulation protein and related proteins.
  
    0.647
Swol_0737
KEGG: bha:BH3965 transposase (22).
 
  
 0.528
Swol_2200
KEGG: dsy:DSY0817 hypothetical protein.
 
  
 0.527
Swol_0024
KEGG: bha:BH3998 transposase (25).
 
  
 0.522
Swol_0485
KEGG: bha:BH3998 transposase (25).
 
  
 0.522
Swol_1288
KEGG: bha:BH3998 transposase (25).
 
  
 0.522
Swol_2218
KEGG: bha:BH3998 transposase (25).
 
  
 0.522
Swol_0736
KEGG: mlo:mll9329 integrase/recombinase; Belongs to the 'phage' integrase family.
       0.473
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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