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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_0737KEGG: bha:BH3965 transposase (22). (253 aa)    
Predicted Functional Partners:
Swol_2217
KEGG: dsy:DSY0837 hypothetical protein.
  
     0.770
Swol_2216
DNA replication protein-like protein; KEGG: bfs:BF1535 insertion sequence IS21-like putative ATP-binding protein.
 
  
 0.758
Swol_0023
KEGG: dsy:DSY0816 hypothetical protein.
 
  
 0.563
Swol_0484
KEGG: dsy:DSY0816 hypothetical protein.
 
  
 0.563
Swol_1289
KEGG: dsy:DSY0816 hypothetical protein.
 
  
 0.563
Swol_2205
KEGG: dsy:DSY0816 hypothetical protein.
 
  
 0.563
Swol_2219
KEGG: dsy:DSY0816 hypothetical protein.
 
  
 0.563
Swol_0734
KEGG: sat:SYN_00397 ATP binding protein.
 
  
 0.528
Swol_0736
KEGG: mlo:mll9329 integrase/recombinase; Belongs to the 'phage' integrase family.
       0.418
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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