STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_0754KEGG: mta:Moth_1793 hypothetical protein. (74 aa)    
Predicted Functional Partners:
Swol_0753
KEGG: mta:Moth_1792 hypothetical protein.
 
     0.766
Swol_0525
KEGG: sat:SYN_01761 pilin assembly protein.
  
     0.709
Swol_0752
KEGG: hypothetical protein.
 
     0.694
Swol_1644
Hypothetical protein.
  
     0.665
Swol_1786
KEGG: mta:Moth_2110 hypothetical protein.
  
     0.613
Swol_1434
KEGG: mta:Moth_1703 hypothetical protein.
  
     0.611
Swol_0555
KEGG: mta:Moth_1531 hypothetical protein.
  
     0.562
Swol_0747
Hypothetical protein.
 
     0.558
Swol_1919
KEGG: tma:TM1852 hypothetical protein.
  
     0.541
Swol_2047
KEGG: mta:Moth_1895 alkylhydroperoxidase AhpD core.
  
     0.509
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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