STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_0879KEGG: tte:TTE1412 hypothetical protein. (467 aa)    
Predicted Functional Partners:
Swol_0878
KEGG: sma:SAV2630 putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family.
 
    0.844
Swol_0876
KEGG: bha:BH2434 inhibition of CheR-mediated methylation of MCPs.
 
    0.837
cheD
CheD, stimulates methylation of MCP proteins; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family.
 
     0.807
Swol_0880
Hypothetical protein.
       0.733
Swol_0881
Hypothetical protein.
       0.733
Swol_0189
KEGG: tte:TTE0491 flagellar protein.
 
     0.720
Swol_0855
KEGG: tte:TTE1436 putative flagellar hook-length control protein FliK.
 
   
 0.706
Swol_1446
KEGG: cac:CAC0586 CheX protein (uncharacterized ORF in chemotaxis operon).
  
     0.701
Swol_0870
KEGG: dsy:DSY2973 hypothetical protein.
 
   
 0.662
Swol_0859
Hypothetical protein; KEGG: tte:TTE1432 uncharacterized protein, possibly involved in motility.
 
   
 0.660
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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