STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_0910KEGG: chy:CHY_1148 peptidase, M16 family; Belongs to the peptidase M16 family. (422 aa)    
Predicted Functional Partners:
Swol_1353
Oxidoreductase; KEGG: ctc:CTC00417 oxidoreductase.
   
 0.993
Swol_1440
Ferridoxin; KEGG: sat:SYN_00800 ferridoxin.
  
 
 0.946
Swol_0658
KEGG: tko:TK1612 glutamate synthase beta chain-related oxidoreductase, containing 2Fe-2S and 4Fe-4S clusters.
  
 
 0.892
Swol_1700
KEGG: sat:SYN_00151 2Fe-2S iron-sulfur cluster domain with dehydrogenase.
   
 
 0.888
atpH
ATP synthase F1 delta subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation; Belongs to the ATPase delta chain family.
  
 
 0.881
Swol_1701
NADH dehydrogenase (quinone); KEGG: det:DET0729 [Fe] hydrogenase, HymB subunit, putative.
  
 
 0.849
Swol_0657
NADH dehydrogenase (quinone); KEGG: tko:TK1613 NADH:ubiquinone oxidoreductase, NADH-binding subunit F.
   
 
 0.845
Swol_0784
NADH dehydrogenase (quinone); KEGG: chy:CHY_0732 Fe-hydrogenase, beta subunit.
   
 
 0.845
Swol_1018
NADH dehydrogenase (quinone); KEGG: chy:CHY_0732 Fe-hydrogenase, beta subunit.
   
 
 0.845
Swol_1024
NADH dehydrogenase (quinone); KEGG: tte:TTE0893 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit.
   
 
 0.845
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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