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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_0993Restriction endonuclease-like protein; KEGG: mba:Mbar_A1622 hypothetical protein. (421 aa)    
Predicted Functional Partners:
Swol_0992
Hypothetical protein.
       0.623
Swol_0994
Hypothetical protein; KEGG: chy:CHY_2653 putative restriction enzyme.
  
  
 0.622
Swol_0991
KEGG: gsu:GSU2107 hypothetical protein.
  
  
 0.584
Swol_0516
KEGG: gka:GK0346 type I restriction-modification system R subunit (endonuclease).
 
  
 0.557
Swol_0798
KEGG: sat:SYN_00604 formate dehydrogenase iron-sulfur subunit.
   
    0.531
Swol_1704
KEGG: mta:Moth_0721 4Fe-4S ferredoxin, iron-sulfur binding.
   
    0.531
Swol_1824
KEGG: dsy:DSY3100 formate dehydrogenase beta subunit.
   
    0.531
Swol_1834
KEGG: mta:Moth_0721 4Fe-4S ferredoxin, iron-sulfur binding.
   
    0.531
Swol_0990
KEGG: mma:MM0154 hypothetical protein.
  
    0.488
Swol_0512
KEGG: gka:GK0343 type I restriction modification system M subunit (site-specific DNA-methyltransferase subunit).
 
  
 0.473
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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