STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_1069KEGG: bcl:ABC2994 polysaccharide deacetylase. (247 aa)    
Predicted Functional Partners:
Swol_2439
KEGG: ade:Adeh_3521 glycosyl transferase, family 2.
  
 0.950
Swol_2158
KEGG: cac:CAC2523 glycosyltransferase.
 
  
 0.919
Swol_1068
Xylanase/chitin deacetylase-like protein; KEGG: chy:CHY_1591 polysaccharide deacetylase family protein.
 
    
0.718
Swol_1871
Glycosyl hydrolase-like protein; KEGG: dsy:DSY0133 hypothetical protein.
 
    
 0.686
Swol_1908
Glycosyltransferases involved in cell wall biogenesis-like protein; KEGG: pca:Pcar_1758 putative glycosyl transferase.
  
  
 0.617
Swol_1070
KEGG: chy:CHY_0504 glutamine ABC transporter, glutamine-binding protein.
     
 0.496
Swol_0059
KEGG: sth:STH1375 hypothetical protein.
  
  
 0.422
Swol_0624
KEGG: bcl:ABC0513 glycosyltransferase.
  
  
 0.422
Swol_0635
Hypothetical protein; KEGG: cpv:cgd5_2590 Alg5 like dolichyl-phosphate beta-glucosyltransferase.
  
  
 0.422
Swol_2155
KEGG: bha:BH2230 hypothetical protein.
  
  
 0.422
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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