Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swol_1145KEGG: bja:bll4548 hypothetical protein. (375 aa)    
Predicted Functional Partners:
Swol_1242
KEGG: tte:TTE0551 predicted acyl dehydratase.
 
  
 0.935
Swol_1099
KEGG: btk:BT9727_1208 poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit.
  
  
 
0.927
Swol_1355
KEGG: tte:TTE0551 predicted acyl dehydratase.
 
  
 0.926
Swol_1356
KEGG: ctc:CTC00706 (de)hydratase mit MaoC domain.
 
  
 0.926
Swol_1241
KEGG: btk:BT9727_1208 poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit.
  
  
 
0.925
addA
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination. The AddA nuclease domain is required for chi fragment generation; this subunit has the helicase and 3' -> 5' nuclease activities; Belongs to the helicase family. AddA subfamily.
       0.766
Swol_1144
KEGG: pae:PA2893 acyl-CoA synthase.
   
 0.671
Swol_1781
KEGG: tte:TTE0555 predicted acetyltransferase and hydrolase with the alpha/beta hydrolase fold.
  
     0.511
Swol_1421
KEGG: eba:ebA552 hypothetical protein.
  
     0.489
Swol_0384
KEGG: dsy:DSY4721 hypothetical protein.
  
  
 0.475
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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