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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_1148KEGG: chy:CHY_0956 hypothetical protein. (59 aa)    
Predicted Functional Partners:
surE
Exopolyphosphatase / 3'-nucleotidase / 5'-nucleotidase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
       0.780
Swol_0450
KEGG: pca:Pcar_2726 hypothetical protein.
  
     0.752
Swol_1404
KEGG: chy:CHY_1935 hypothetical protein.
  
     0.738
Swol_1149
Thylakoidal processing peptidase. Serine peptidase. MEROPS family S26A; KEGG: syf:Synpcc7942_0487 peptidase S26A, signal peptidase I; Belongs to the peptidase S26 family.
       0.737
Swol_1786
KEGG: mta:Moth_2110 hypothetical protein.
  
     0.737
Swol_1151
Hypothetical protein.
       0.730
Swol_0915
Response regulator receiver protein; KEGG: mta:Moth_1106 hypothetical protein.
  
     0.690
Swol_0599
KEGG: chy:CHY_1966 hypothetical protein.
  
     0.614
Swol_0973
KEGG: dsy:DSY1594 hypothetical protein; Belongs to the UPF0342 family.
  
     0.578
Swol_0676
KEGG: dsy:DSY2235 hypothetical protein; Belongs to the FPP/GGPP synthase family.
  
     0.569
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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