Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swol_1183KEGG: dsy:DSY2307 hypothetical protein. (101 aa)    
Predicted Functional Partners:
Swol_1182
KEGG: spb:M28_Spy0445 ParE-domain protein.
 
 
   0.956
Swol_1075
KEGG: dsy:DSY2033 hypothetical protein.
 
 
 0.886
Swol_0151
KEGG: dsy:DSY2308 hypothetical protein.
 
 
   0.815
Swol_0119
KEGG: mta:Moth_1940 hypothetical protein.
  
 
 0.732
Swol_0286
KEGG: gka:GK2354 hypothetical protein.
  
 
 0.695
Swol_0577
Hypothetical protein.
 
 
   0.554
Swol_1184
KEGG: mta:Moth_0243 hypothetical protein.
       0.430
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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