STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_1197KEGG: cpe:CPE2179 hypothetical protein. (178 aa)    
Predicted Functional Partners:
hisC
KEGG: mta:Moth_0515 histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
       0.786
gpr
GPR endopeptidase; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
  
 0.775
Swol_0554
KEGG: mta:Moth_1532 hypothetical protein.
  
     0.764
Swol_0553
KEGG: chy:CHY_2004 putative sporulation protein.
  
     0.756
Swol_0764
KEGG: btk:BT9727_3670 hypothetical protein.
  
    0.733
Swol_0093
KEGG: tte:TTE2396 serine phosphatase RsbU, regulator of sigma subunit.
  
     0.719
Swol_0080
KEGG: mta:Moth_0083 transcriptional regulator, AbrB family.
  
  
 0.711
Swol_2375
KEGG: sth:STH103 stage III sporulation protein D.
  
     0.699
Swol_0550
KEGG: tte:TTE1283 stage III sporulation protein spoIIIAA.
  
     0.685
Swol_0063
KEGG: tte:TTE2552 pro-sigma-E processing factor spoIIR.
  
     0.654
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.