STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_1225KEGG: mta:Moth_0912 serine/threonine protein kinase. (612 aa)    
Predicted Functional Partners:
Swol_1226
KEGG: ade:Adeh_0733 serine/threonine phosphatase.
 
 0.994
Swol_0351
KEGG: mmp:MMP0029 hypothetical protein.
   
 
 0.961
Swol_2201
KEGG: mta:Moth_2339 hypothetical protein.
  
 
 0.911
Swol_2209
KEGG: mta:Moth_2339 hypothetical protein.
  
 
 0.911
Swol_2283
KEGG: mta:Moth_2339 hypothetical protein.
  
 
 0.911
rsgA
GTPase EngC; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
  
  
 0.866
Swol_0270
KEGG: dsy:DSY2995 hypothetical protein.
   
 
 0.824
Swol_0958
KEGG: tte:TTE1596 Cell division initiation protein.
 
 
 0.794
Swol_2060
KEGG: mhu:Mhun_0060 serine phosphatase.
 
 
 0.774
Swol_0820
Peptidoglycan glycosyltransferase; KEGG: mta:Moth_0837 stage V sporulation protein D.
  
 
 0.743
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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