STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_1245Hypothetical protein. (219 aa)    
Predicted Functional Partners:
Swol_2539
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
   
   0.674
Swol_0558
KEGG: chy:CHY_1999 oxaloacetate decarboxylase, alpha subunit.
  
    0.550
Swol_0847
KEGG: tte:TTE1444 flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.
    
   0.520
Swol_1868
Metal-dependent protease-like protein; KEGG: cac:CAC2839 inactive homolog of metal-dependent protease. YDIC B.subtilis ortholog.
  
    0.477
Swol_1247
KEGG: chy:CHY_0674 putative cell-wall associated endopeptidase.
   
   0.464
Swol_1246
Hypothetical protein.
       0.439
Swol_1244
Hypothetical protein; KEGG: sru:SRU_2684 PhaF, putative.
       0.434
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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