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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_1247KEGG: chy:CHY_0674 putative cell-wall associated endopeptidase. (257 aa)    
Predicted Functional Partners:
Swol_0820
Peptidoglycan glycosyltransferase; KEGG: mta:Moth_0837 stage V sporulation protein D.
  
 
 0.713
Swol_1225
KEGG: mta:Moth_0912 serine/threonine protein kinase.
  
  
 0.688
Swol_0126
KEGG: mta:Moth_0517 N-acetylmuramoyl-L-alanine amidase.
  
  
 0.675
Swol_1663
ErfK/YbiS/YcfS/YnhG; KEGG: mta:Moth_0101 ErfK/YbiS/YcfS/YnhG.
  
  
 0.660
Swol_1888
ErfK/YbiS/YcfS/YnhG; KEGG: mta:Moth_0101 ErfK/YbiS/YcfS/YnhG.
  
  
 0.660
Swol_1246
Hypothetical protein.
       0.644
Swol_0246
Cell division protein FtsX; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
  
 0.591
Swol_0601
KEGG: cyb:CYB_0507 sensory box histidine kinase/response regulator.
  
  
 0.590
Swol_1249
Thermostable dipeptidase. Metallo peptidase. MEROPS family M19; KEGG: tte:TTE2129 Zn-dependent dipeptidase, microsomal dipeptidase homolog.
       0.583
mltG
Periplasmic solute-binding protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
 
  
 0.571
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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