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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_1271KEGG: dsy:DSY2501 hypothetical protein. (198 aa)    
Predicted Functional Partners:
Swol_1272
KEGG: dsy:DSY2502 hypothetical protein.
 
  
 0.983
Swol_0078
KEGG: tte:TTE2379 germination protein.
  
     0.694
Swol_0589
SpoIVB peptidase. Serine peptidase. MEROPS family S55; KEGG: dsy:DSY2342 hypothetical protein.
  
    0.689
Swol_1322
Conserved hypothetical protein; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
   
 0.678
Swol_0085
KEGG: tte:TTE2450 hypothetical protein.
  
     0.667
GrkA
grkA; KEGG: grkA; spore germination protein, GrkA.
  
     0.654
Swol_0080
KEGG: mta:Moth_0083 transcriptional regulator, AbrB family.
  
     0.651
Swol_0629
KEGG: mta:Moth_1373 GerA spore germination protein.
  
   
 0.598
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.
     
 0.591
Swol_2015
Integral membrane protein; Probably functions as a manganese efflux pump.
  
     0.583
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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