STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_1338KEGG: gka:GK2223 hypothetical protein. (296 aa)    
Predicted Functional Partners:
Swol_1337
Hypothetical protein.
 
     0.958
Swol_1339
KEGG: chy:CHY_1923 putative stage II sporulation protein P.
 
     0.875
Swol_1340
KEGG: mta:Moth_1327 protein of unknown function DUF1614.
 
     0.874
Swol_1336
KEGG: mta:Moth_1325 hypothetical protein.
 
     0.768
Swol_0931
KEGG: tte:TTE1683 hypothetical protein.
  
     0.591
Swol_2537
KEGG: cac:CAC3720 hypothetical protein.
  
     0.578
Swol_1568
KEGG: gka:GK2495 hypothetical protein.
  
     0.564
Swol_1506
KEGG: chy:CHY_0019 hypothetical protein.
  
     0.557
Swol_0912
KEGG: mta:Moth_1062 hypothetical protein.
  
     0.546
Swol_1335
Hypothetical protein.
       0.534
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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