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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_1383KEGG: bld:BLi02113 putative ABC transporter ATP-binding protein; RBL01943. (288 aa)    
Predicted Functional Partners:
Swol_1382
KEGG: bcl:ABC0260 transcriptional regulator, GntR family.
 
  
 0.953
Swol_1384
KEGG: bld:BLi02112 hypothetical protein.
 
     0.936
Swol_2449
ABC-type multidrug transport system permease component; KEGG: mta:Moth_1899 ABC-2.
 
  
 0.926
Swol_1722
KEGG: sth:STH2107 hypothetical protein.
  
 
 0.773
Swol_2242
KEGG: tma:TM0764 putative ABC-2 type transport system permease protein.
  
 
 0.706
Swol_1621
KEGG: mta:Moth_1175 transcriptional regulator, GntR family.
 
  
 0.643
atpD
Sodium-transporting two-sector ATPase; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
    
 
 0.595
atpA
Sodium-transporting two-sector ATPase; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.
    
   0.565
Swol_2244
KEGG: ctc:CTC00804 transcriptional regulator, GntR family.
 
  
 0.523
atpG
Sodium-transporting two-sector ATPase; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.
   
   0.519
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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