STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_1390KEGG: cac:CAC0599 transcriptional regulator, GntR family. (129 aa)    
Predicted Functional Partners:
Swol_1391
KEGG: cac:CAC0600 predicted membrane protein.
 
   
 0.897
Swol_1621
KEGG: mta:Moth_1175 transcriptional regulator, GntR family.
  
     0.766
Swol_1389
KEGG: bld:BLi02113 putative ABC transporter ATP-binding protein; RBL01943.
 
  
 0.727
Swol_1392
KEGG: mbu:Mbur_0693 hypothetical protein.
       0.539
Swol_1383
KEGG: bld:BLi02113 putative ABC transporter ATP-binding protein; RBL01943.
 
  
 0.512
Swol_1620
KEGG: mta:Moth_1174 ABC transporter related.
 
  
 0.488
Swol_1393
KEGG: mth:MTH1811 N-carbamoyl-D-amino acid amidohydrolase.
       0.463
Swol_1388
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase; KEGG: tte:TTE1013 phospho-2-dehydro-3-deoxyheptonate aldolase.
       0.411
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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