STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_1407Hypothetical protein. (117 aa)    
Predicted Functional Partners:
folE
KEGG: chy:CHY_0955 GTP cyclohydrolase I.
       0.664
Swol_1405
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; KEGG: cac:CAC1372 cobalamin biosynthesis enzyme CobT.
       0.472
Swol_1406
KEGG: gka:GK2283 ribosomal large subunit pseudouridine synthaseB (pseudouridylate synthase) (uracil hydrolyase); Belongs to the pseudouridine synthase RsuA family.
       0.472
Swol_1404
KEGG: chy:CHY_1935 hypothetical protein.
       0.413
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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