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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_1454KEGG: lac:LBA1827 chromosome partitioning protein. (262 aa)    
Predicted Functional Partners:
Swol_2567
Chromosome segregation DNA-binding protein / transcriptional regulator; KEGG: tte:TTE2790 predicted Transcriptional regulator; Belongs to the ParB family.
 
 
 0.917
Swol_2569
Transcriptional regulator; KEGG: lin:lin2926 highly similar to B. subtilis DNA-binding protein Spo0J-like homolog YyaA; Belongs to the ParB family.
 
 
 0.916
Swol_1455
KEGG: dde:Dde_1577 CheA signal transduction histidine kinases.
  
    0.794
Swol_1453
Hypothetical protein.
       0.788
Swol_1456
KEGG: dde:Dde_1576 response regulator receiver domain protein (CheY-like).
  
  
 0.588
Swol_1457
MCP methyltransferase, CheR-type; KEGG: tte:TTE1037 Methylase of chemotaxis methyl-accepting proteins.
     
 0.560
Swol_1458
KEGG: tte:TTE1036 hypothetical protein.
       0.556
Swol_1452
KEGG: chy:CHY_0415 molecular chaperone DnaK.
       0.479
dnaA
Initiation of chromosome replication; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
 
 
 0.470
Swol_1450
CheW protein; KEGG: tte:TTE1034 Chemotaxis signal transduction protein.
  
   0.448
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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