Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swol_1473KEGG: mac:MA1234 iron(III) ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (338 aa)    
Predicted Functional Partners:
Swol_1472
KEGG: mac:MA1233 iron(III) ABC transporter, ATP-binding protein.
 
 
 0.987
Swol_1694
KEGG: mta:Moth_1423 ABC transporter related.
 
 
 0.945
Swol_1673
KEGG: cac:CAC1988 ferrichrome-binding periplasmic protein.
 
 
 0.868
Swol_1187
KEGG: mac:MA1222 iron(III) ABC transporter, solute-binding protein.
 
 
 0.863
Swol_1675
KEGG: mba:Mbar_A2260 hypothetical protein.
 
 
 0.863
Swol_2486
KEGG: cac:CAC1988 ferrichrome-binding periplasmic protein.
 
 
 0.863
Swol_1679
KEGG: nwi:Nwi_2073 periplasmic binding protein.
 
 
 0.861
Swol_1691
KEGG: nha:Nham_0956 periplasmic binding protein.
 
 
 0.861
Swol_2097
KEGG: mta:Moth_1419 periplasmic binding protein.
 
 
 0.853
Swol_1687
KEGG: mta:Moth_1419 periplasmic binding protein.
 
 
 0.849
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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