STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_1503YvyF; KEGG: bld:BLi03788 YvyF. (75 aa)    
Predicted Functional Partners:
Swol_2010
KEGG: ttj:TTHA1020 hypothetical protein.
  
 0.962
Swol_2075
KEGG: ttj:TTHA1020 hypothetical protein.
  
 0.962
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.862
Swol_0190
Anti-sigma-28 factor, FlgM; KEGG: dvu:DVU0523 negative regulator of flagellin synthesis FlgM.
 
 
 0.858
gpmI
Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
   
 0.847
Swol_0305
KEGG: mta:Moth_1187 RNA-metabolising metallo-beta-lactamase.
    
 0.842
Swol_1203
KEGG: mta:Moth_1187 RNA-metabolising metallo-beta-lactamase.
    
 0.842
Swol_0458
KEGG: pfa:PF10_0351 hypothetical protein.
   
 0.834
Swol_1943
Hypothetical protein.
   
 0.834
Swol_2098
Hypothetical protein.
   
 0.834
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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