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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_1529KEGG: tte:TTE1891 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain. (288 aa)    
Predicted Functional Partners:
Swol_1531
KEGG: dsy:DSY3437 hypothetical protein.
  
 0.950
Swol_1532
KEGG: mmp:MMP0451 hypothetical protein.
 
  
 0.896
Swol_0924
KEGG: gme:Gmet_3123 beta-lactamase-like.
 
     0.797
Swol_2090
DNA-binding proteins-like protein; KEGG: mta:Moth_1655 protein of unknown function DUF134; Belongs to the UPF0251 family.
 
     0.791
Swol_1530
KEGG: pca:Pcar_0748 hypothetical protein.
 
    
0.761
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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