STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_1543Putative transcriptional regulator, XRE family; KEGG: ctc:CTC00922 putative transcriptional regulator. (359 aa)    
Predicted Functional Partners:
Swol_2412
Response regulator receiver protein; KEGG: dsy:DSY4941 hypothetical protein.
    
 
 0.693
Swol_1544
KEGG: sat:SYN_02742 hypothetical cytosolic protein.
 
     0.671
Swol_0803
Hypothetical protein; KEGG: sav:SAV1998 repressor homolog.
  
  
 0.651
Swol_2248
KEGG: plt:Plut_1806 hypothetical protein.
  
  
 0.603
Swol_0601
KEGG: cyb:CYB_0507 sensory box histidine kinase/response regulator.
     
 0.544
Swol_0286
KEGG: gka:GK2354 hypothetical protein.
 
   
 0.466
Swol_1257
Competence/damage-inducible protein cinA; KEGG: dsy:DSY1955 hypothetical protein; Belongs to the CinA family.
     
 0.445
Swol_2522
KEGG: chy:CHY_2157 CRISPR-associated protein, Csh1 family.
  
     0.419
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
     
 0.416
Swol_1595
KEGG: mta:Moth_0575 DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.412
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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