STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_1567KEGG: mta:Moth_0592 putative stage IV sporulation YqfD. (407 aa)    
Predicted Functional Partners:
Swol_1568
KEGG: gka:GK2495 hypothetical protein.
 
  
 0.989
Swol_0764
KEGG: btk:BT9727_3670 hypothetical protein.
 
   
 0.838
Swol_2375
KEGG: sth:STH103 stage III sporulation protein D.
  
   
 0.824
Swol_0063
KEGG: tte:TTE2552 pro-sigma-E processing factor spoIIR.
  
  
 0.799
Swol_1586
KEGG: mta:Moth_0578 hypothetical protein.
  
   
 0.798
Swol_0834
Sporulation factor SpoIIGA. Unknown type peptidase. MEROPS family U04; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
   
 0.797
Swol_0085
KEGG: tte:TTE2450 hypothetical protein.
 
   
 0.795
Swol_0550
KEGG: tte:TTE1283 stage III sporulation protein spoIIIAA.
  
  
 0.787
Swol_1322
Conserved hypothetical protein; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
  
 0.782
Swol_1127
KEGG: chy:CHY_1923 putative stage II sporulation protein P.
  
   
 0.781
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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