STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_1596KEGG: mta:Moth_0570 competence protein ComEA helix-hairpin-helix region. (207 aa)    
Predicted Functional Partners:
Swol_1595
KEGG: mta:Moth_0575 DNA internalization-related competence protein ComEC/Rec2.
 
  
 0.929
Swol_0533
KEGG: mta:Moth_1552 type II secretion system protein.
  
  
 0.757
Swol_0531
KEGG: mta:Moth_1554 type II secretion system protein E.
  
  
 0.743
Swol_1710
Hydrolase (metallo-beta-lactamase superfamily)-like protein; KEGG: mta:Moth_1254 beta-lactamase-like.
 
  
 0.661
Swol_0538
Type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A; KEGG: tte:TTE1266 leader peptidase (prepilin peptidase) / N-methyltransferase.
   
  
 0.648
Swol_0534
Hypothetical protein; KEGG: tte:TTE1265 type IV pilus assembly protein PilA.
 
  
 0.603
Swol_2539
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
  
  
 0.550
Swol_1257
Competence/damage-inducible protein cinA; KEGG: dsy:DSY1955 hypothetical protein; Belongs to the CinA family.
     
 0.529
Swol_0702
KEGG: xac:XAC0531 hypothetical protein.
  
  
 0.524
Swol_0188
KEGG: mta:Moth_0225 phosphoribosyltransferase.
  
  
 0.490
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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