rplU protein (Syntrophomonas wolfei Goettingen)

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rplU

LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (104 aa)

Predicted Functional Partners:

rpmA

0.999

rpmF

0.995

rplT

0.995

rplS

0.995

rpsI

0.994

rplM

0.994

rplD

0.994

rplI

0.994

rpsR

0.994

rpsB

0.993

Your Current Organism:

Syntrophomonas wolfei Goettingen

NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplD	rplI	Swol_2332	Swol_2535	LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	LSU ribosomal protein L9P; Binds to the 23S rRNA.	0.988
rplD	rplM	Swol_2332	Swol_2298	LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.996
rplD	rplS	Swol_2332	Swol_1491	LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.991
rplD	rplT	Swol_2332	Swol_1092	LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.993
rplD	rplU	Swol_2332	Swol_1613	LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.994
rplD	rpmA	Swol_2332	Swol_1611	LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	KEGG: tte:TTE0915 Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.991
rplD	rpmF	Swol_2332	Swol_0770	LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	KEGG: chy:CHY_1453 ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.979
rplD	rpsB	Swol_2332	Swol_0882	LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	KEGG: chy:CHY_1787 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.998
rplD	rpsI	Swol_2332	Swol_2297	LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	KEGG: tte:TTE2256 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.995
rplD	rpsR	Swol_2332	Swol_2538	LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	SSU ribosomal protein S18P; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.991
rplI	rplD	Swol_2535	Swol_2332	LSU ribosomal protein L9P; Binds to the 23S rRNA.	LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	0.988
rplI	rplM	Swol_2535	Swol_2298	LSU ribosomal protein L9P; Binds to the 23S rRNA.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.991
rplI	rplS	Swol_2535	Swol_1491	LSU ribosomal protein L9P; Binds to the 23S rRNA.	LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.991
rplI	rplT	Swol_2535	Swol_1092	LSU ribosomal protein L9P; Binds to the 23S rRNA.	LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.994
rplI	rplU	Swol_2535	Swol_1613	LSU ribosomal protein L9P; Binds to the 23S rRNA.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.994
rplI	rpmA	Swol_2535	Swol_1611	LSU ribosomal protein L9P; Binds to the 23S rRNA.	KEGG: tte:TTE0915 Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.988
rplI	rpmF	Swol_2535	Swol_0770	LSU ribosomal protein L9P; Binds to the 23S rRNA.	KEGG: chy:CHY_1453 ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.976
rplI	rpsB	Swol_2535	Swol_0882	LSU ribosomal protein L9P; Binds to the 23S rRNA.	KEGG: chy:CHY_1787 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.985
rplI	rpsI	Swol_2535	Swol_2297	LSU ribosomal protein L9P; Binds to the 23S rRNA.	KEGG: tte:TTE2256 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.990
rplI	rpsR	Swol_2535	Swol_2538	LSU ribosomal protein L9P; Binds to the 23S rRNA.	SSU ribosomal protein S18P; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.997

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