rplU protein (Syntrophomonas wolfei Goettingen)

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rplU

LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (104 aa)

Predicted Functional Partners:

rpmA

0.999

rplT

0.995

rplS

0.995

rpsP

0.995

rpsI

0.995

rplM

0.995

rplX

0.995

rplD

0.995

rplI

0.995

rpmB

0.994

Your Current Organism:

Syntrophomonas wolfei Goettingen

NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplD	rplI	Swol_2332	Swol_2535	LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	LSU ribosomal protein L9P; Binds to the 23S rRNA.	0.994
rplD	rplM	Swol_2332	Swol_2298	LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.998
rplD	rplS	Swol_2332	Swol_1491	LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.995
rplD	rplT	Swol_2332	Swol_1092	LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.995
rplD	rplU	Swol_2332	Swol_1613	LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.995
rplD	rplX	Swol_2332	Swol_2322	LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	LSU ribosomal protein L24P; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.999
rplD	rpmA	Swol_2332	Swol_1611	LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	KEGG: tte:TTE0915 Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.987
rplD	rpmB	Swol_2332	Swol_0757	LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	KEGG: cac:CAC1733 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.974
rplD	rpsI	Swol_2332	Swol_2297	LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	KEGG: tte:TTE2256 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.996
rplD	rpsP	Swol_2332	Swol_1497	LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	KEGG: dsy:DSY2598 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.993
rplI	rplD	Swol_2535	Swol_2332	LSU ribosomal protein L9P; Binds to the 23S rRNA.	LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	0.994
rplI	rplM	Swol_2535	Swol_2298	LSU ribosomal protein L9P; Binds to the 23S rRNA.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.994
rplI	rplS	Swol_2535	Swol_1491	LSU ribosomal protein L9P; Binds to the 23S rRNA.	LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.992
rplI	rplT	Swol_2535	Swol_1092	LSU ribosomal protein L9P; Binds to the 23S rRNA.	LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.995
rplI	rplU	Swol_2535	Swol_1613	LSU ribosomal protein L9P; Binds to the 23S rRNA.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.995
rplI	rplX	Swol_2535	Swol_2322	LSU ribosomal protein L9P; Binds to the 23S rRNA.	LSU ribosomal protein L24P; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.976
rplI	rpmA	Swol_2535	Swol_1611	LSU ribosomal protein L9P; Binds to the 23S rRNA.	KEGG: tte:TTE0915 Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.986
rplI	rpmB	Swol_2535	Swol_0757	LSU ribosomal protein L9P; Binds to the 23S rRNA.	KEGG: cac:CAC1733 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.974
rplI	rpsI	Swol_2535	Swol_2297	LSU ribosomal protein L9P; Binds to the 23S rRNA.	KEGG: tte:TTE2256 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.994
rplI	rpsP	Swol_2535	Swol_1497	LSU ribosomal protein L9P; Binds to the 23S rRNA.	KEGG: dsy:DSY2598 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.980

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