STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_1614KEGG: gme:Gmet_3192 ribonuclease E and G. (476 aa)    
Predicted Functional Partners:
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
 
 0.912
Swol_1615
KEGG: dsy:DSY3168 hypothetical protein.
       0.798
Swol_1616
KEGG: dsy:DSY3169 hypothetical protein.
       0.798
eno
Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
   
 
 0.796
Swol_0262
Uncharacterised P-loop ATPase protein UPF0042; Displays ATPase and GTPase activities.
 
 
 
 0.778
Swol_2010
KEGG: ttj:TTHA1020 hypothetical protein.
   
 
 0.772
Swol_2075
KEGG: ttj:TTHA1020 hypothetical protein.
   
 
 0.772
Swol_2573
KEGG: mta:Moth_2520 single-stranded nucleic acid binding R3H.
   
   0.712
Swol_1897
KEGG: sth:STH1647 ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.
   
 
 0.710
Swol_1496
RNA-binding protein (KH domain); KEGG: cac:CAC1756 predicted nucleic acid binding protein, containing KH domain; Belongs to the UPF0109 family.
    
   0.688
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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