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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_1661KEGG: tde:TDE1838 hypothetical protein. (62 aa)    
Predicted Functional Partners:
Swol_1660
KEGG: chy:CHY_2497 hypothetical protein.
 
 
 
 0.975
Swol_1569
KEGG: dsy:DSY3841 hypothetical protein.
 
 
 
 0.922
Swol_0572
KEGG: noc:Noc_2743 hypothetical protein.
 
 
 
 0.649
Swol_0218
KEGG: eli:ELI_09120 hypothetical protein.
 
 
 
 0.570
Swol_1541
KEGG: mhu:Mhun_2778 protein of unknown function UPF0150.
 
 
 
 0.562
Swol_1009
KEGG: mhu:Mhun_2778 protein of unknown function UPF0150.
 
 
 
 0.558
Swol_0620
KEGG: mac:MA0764 hypothetical protein.
 
 
 
 0.513
Swol_1662
KEGG: cpe:CPE0249 hypothetical protein.
       0.427
Swol_0795
KEGG: mta:Moth_2147 2-oxoisovalerate dehydrogenase, E1 component beta subunit.
   
 
 0.426
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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