Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swol_1663ErfK/YbiS/YcfS/YnhG; KEGG: mta:Moth_0101 ErfK/YbiS/YcfS/YnhG. (283 aa)    
Predicted Functional Partners:
Swol_1247
KEGG: chy:CHY_0674 putative cell-wall associated endopeptidase.
  
  
 0.645
Swol_0126
KEGG: mta:Moth_0517 N-acetylmuramoyl-L-alanine amidase.
     
 0.581
Swol_1350
KEGG: tte:TTE2785 UDP-N-acetylmuramyl tripeptide synthase; Belongs to the MurCDEF family.
  
  
 0.487
Swol_1662
KEGG: cpe:CPE0249 hypothetical protein.
     
 0.487
Swol_1225
KEGG: mta:Moth_0912 serine/threonine protein kinase.
     
 0.477
Swol_0820
Peptidoglycan glycosyltransferase; KEGG: mta:Moth_0837 stage V sporulation protein D.
      
 0.475
Swol_1084
Non-ribosomal peptide synthetase modules and related proteins-like protein; KEGG: bld:BLi00402 lichenysin synthetase B; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.452
Swol_0601
KEGG: cyb:CYB_0507 sensory box histidine kinase/response regulator.
  
  
 0.406
Swol_1109
Peptidoglycan glycosyltransferase; KEGG: mta:Moth_1710 penicillin-binding protein 1A.
   
  
 0.406
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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