Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swol_1665KEGG: mta:Moth_1425 protein of unknown function DUF364. (249 aa)    
Predicted Functional Partners:
Swol_1664
KEGG: mhu:Mhun_2004 formylmethanofuran dehydrogenase, subunit E region.
 
    0.794
Swol_1690
KEGG: mta:Moth_1419 periplasmic binding protein.
 
    0.620
Swol_1687
KEGG: mta:Moth_1419 periplasmic binding protein.
 
    0.603
Swol_2097
KEGG: mta:Moth_1419 periplasmic binding protein.
 
    0.582
Swol_1694
KEGG: mta:Moth_1423 ABC transporter related.
 
    0.466
Swol_1691
KEGG: nha:Nham_0956 periplasmic binding protein.
 
    0.410
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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